MGC_2016_unknown_strain
PSP 10012
DNA Source: Medicinal Genomics
General Information
- Accession Date
- May 31, 2021
- Report Type
- Whole-Genome Sequencing
Genetic Information
These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.
- No. of Contigs (>= 25K bp)
- 352
- No. of Contigs (>= 50K bp)
- 133
- Total Length (>= 25K bp)
- 19,513,131
- Total Length (>= 50K bp)
- 11,990,056
- Total Contigs
- 11,084
- Largest Contig
- 267,799
- Total Length
- 47,872,143
- GC (%)
- 46.12
- N50
- 16,304
Variants
PsiR
1 variant
—
1 MODERATE
PsiR
MODERATE
p.Ala344Val
c.1031C>T
missense variant
G/A
CM039007.1:1655743
PsiT1
18 variants
—
1 HIGH 17 MODERATE
PsiT1
MODERATE
p.Glu121Gly
c.362A>G
missense variant & splice region variant
A/G
CM039007.1:1663786
PsiT1
MODERATE
p.Ile214Leu
c.640A>C
missense variant
A/C
CM039007.1:1664184
PsiT1
MODERATE
p.Thr246Ile
c.737C>T
missense variant
C/T
CM039007.1:1664333
PsiT1
MODERATE
p.Arg266Ser
c.798A>T
missense variant
A/T
CM039007.1:1664394
PsiT1
MODERATE
p.Leu268Ile
c.802C>A
missense variant
C/A
CM039007.1:1664398
PsiT1
MODERATE
p.Thr386Ala
c.1156A>G
missense variant
A/G
CM039007.1:1664803
PsiT1
MODERATE
p.Ile505Val
c.1513A>G
missense variant
A/G
CM039007.1:1665277
PsiT1
MODERATE
p.His539Arg
c.1616A>G
missense variant
A/G
CM039007.1:1665560
PsiT1
MODERATE
p.Met542Ile
c.1626G>A
missense variant
G/A
CM039007.1:1665570
PsiT1
MODERATE
p.Ile563Leu
c.1687A>C
missense variant
A/C
CM039007.1:1665631
PsiT1
MODERATE
p.Val564Ile
c.1690G>A
missense variant
G/A
CM039007.1:1665634
PsiT1
MODERATE
p.Asn572Asp
c.1714A>G
missense variant
A/G
CM039007.1:1665658
PsiT1
HIGH
c.1720+1G>T
c.1720+1G>T
splice donor variant & intron variant
G/T
CM039007.1:1665665
PsiT1
MODERATE
p.Val579Ile
c.1735G>A
missense variant
G/A
CM039007.1:1666040
PsiT1
MODERATE
p.Val579Ala
c.1736T>C
missense variant
T/C
CM039007.1:1666041
PsiT1
MODERATE
p.Ser680Ala
c.2038T>G
missense variant
T/G
CM039007.1:1666406
PsiT1
MODERATE
p.Val709Ala
c.2126T>C
missense variant
T/C
CM039007.1:1666494
PsiT1
MODERATE
p.Arg752Gly
c.2254A>G
missense variant
A/G
CM039007.1:1666622
PsiM
1 variant
—
1 MODERATE
PsiM
MODERATE
p.Arg102Lys
c.305G>A
missense variant
C/T
CM039007.1:1674573
PsiD
3 variants
—
3 MODERATE
PsiD
MODERATE
p.Gly206Asp
c.617G>A
missense variant
C/T
CM039007.1:1676885
PsiD
MODERATE
p.Gly206Ser
c.616G>A
missense variant
C/T
CM039007.1:1676886
PsiD
MODERATE
p.Leu22Phe
c.66G>T
missense variant
C/A
CM039007.1:1677485
Genetic Relatives
Nearest
- Treasure-Coast-2-Mush (PSP10082) — 0.281
- Treasure-coast-1-PS (PSP10054) — 0.282
- Treasure-coast-2-PS (PSP10055) — 0.282
- Treasure-coast-3-PS (PSP10056) — 0.282
- Orissa-India-4-Mush (PSP10073) — 0.301
- Z-strain-1-Mush (PSP10083) — 0.314
- Golden-Teacher_Denver (PSP10011) — 0.319
- Luminous-lucies-2-PS (PSP10032) — 0.321
- Luminous-lucies-1-PS (PSP10034) — 0.321
- Luminous-lucies-3-PS (PSP10033) — 0.321
- Arenal-Volcano-1-Mush (PSP10059) — 0.322
- Roatan-Honduras-4-Mush (PSP10079) — 0.323
- Orissa-India-1-Mush (PSP10072) — 0.331
- Penvy-2-SW (PSP10075) — 0.332
- Penvy-Col5-PS (PSP10044) — 0.332
- Penvy-Col4-PS (PSP10043) — 0.332
- Penvy-1-PS (PSP10045) — 0.332
- Costa-Rica-3-redo-SW (PSP10024) — 0.339
- Chitwan-1-SW (PSP10002) — 0.340
- Bplus-ITW-WM (PSP10129) — 0.349
Most Distant
- Orissa-India-print-ITW (PSP10074) — 0.578
- Bplus-3-PS (PSP10001) — 0.577
- Bplus (PSP10088) — 0.577
- HUA-Early (PSP10092) — 0.576
- GoldenCoast-BAF-A1-UM (PSP10105) — 0.575
- GoldenCoast-BAF-A2-UM (PSP10106) — 0.574
- Orissa-India-ITW (PSP10071) — 0.574
- True-Albino-Teacher-ITW-WM (PSP10140) — 0.574
- Avery-Albino-ITW-WM (PSP10123) — 0.573
- GoldenCoast-BAF-B2-UM (PSP10108) — 0.571
- GoldenCoast-BAF-B1-UM (PSP10107) — 0.571
- McKennaii-1-PS (PSP10069) — 0.571
- Gulf-Coast (PSP10091) — 0.570
- Gulf-Coast-BAF (PSP10090) — 0.570
- Burma-1-SW (PSP10020) — 0.569
- Cambodian--1-PS (PSP10060) — 0.567
- Golden-Teacher (PSP10089) — 0.567
- GoldenCoast-UM (PSP10109) — 0.566
- GoldenTeacher-3-SW (PSP10029) — 0.565
- Ecuador-3-SW (PSP10025) — 0.565
Sequence Data Downloads
The blockchain-registered VCF above can be downloaded by anyone, so its hash can be checked independently against the blockchain record. The remaining sequence data files — FASTQ, BAM and assemblies — are available to authorised accounts. Log in to download, or contact us for access.
Blockchain Registration Information
- Transaction ID
-
6ba44194cc0da4a2
ba77b3ef5ba3d6bb 6ae37859cd3b4d11 4e11ff6258bf7461 - Stamping Certificate
- Download PDF (39.6 KB)
- SHASUM Hash
-
3f5b833b0002012e642ba600168c77db 59e2b2dbf1f2f938 8c076f04cfdd6c9f