Penvy-2-SW
PSP 10075
DNA Source: SporeWorks
General Information
- Accession Date
- June 13, 2021
- Report Type
- Whole-Genome Sequencing
- DNA Source Website
- sporeworks.com
This visualization shows how genetically distinctive this sample is compared to every other sample in this database. Distinctiveness is the average genetic distance from this sample to its five nearest samples: a sample with no close relatives in the collection scores high (rare), while one with several near-identical samples, for example repeated submissions of the same cultivar, scores low (common). The curve is the distribution of that score across the whole collection and the marker shows where this sample falls, so you can read, as a single percentile, how unique it is within this database rather than just how far it is from its nearest match.
More genetically distinct than 54 of 110 cultivars (50th percentile).
Assessing…
Clone Test
Is Penvy-2-SW a resequencing of a culture already in Psilocydia? Every assembled genome was aligned directly to its closest genome in the collection and the divergence measured. Pairs that are one culture sequenced twice sit at or below about 0.03%; genuinely different cultures sit well above it. Where Penvy-2-SW falls on that scale answers the question, calibrated against the collection's own resequencings rather than a rule of thumb.
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Genetic Information
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What is in the assembly
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Variants
No variants to report
Genetic Relatives
Nearest
- Penvy-1-PS (PSP10045) — 0.002
- Penvy-Col5-PS (PSP10044) — 0.002
- Penvy-Col4-PS (PSP10043) — 0.002
- Orissa-India-1-Mush (PSP10072) — 0.173
- Orissa-India-4-Mush (PSP10073) — 0.192
- Costa-Rica-1-redo-SW (PSP10022) — 0.271
- Costa-Rica-2-redo-SW (PSP10023) — 0.272
- Costa-Rica-3-redo-SW (PSP10024) — 0.296
- Treasure-Coast-2-Mush (PSP10082) — 0.315
- Treasure-coast-3-PS (PSP10056) — 0.316
- Treasure-coast-1-PS (PSP10054) — 0.316
- Treasure-coast-2-PS (PSP10055) — 0.317
- Bplus-ITW-WM (PSP10129) — 0.318
- Roatan-Honduras-4-Mush (PSP10079) — 0.321
- Tosohatchee-print-ITW (PSP10081) — 0.325
- Arenal-Volcano-1-Mush (PSP10059) — 0.328
- MGC_2016_unknown_strain (PSP10012) — 0.332
- ColumbiaRust-1-SW (PSP10021) — 0.333
- Z-strain-1-Mush (PSP10083) — 0.333
- Costa-Rica-1-redo-SW (PSP10003) — 0.334
Most Distant
- Bplus-3-PS (PSP10001) — 0.727
- GoldenCoast-BAF-B1-UM (PSP10107) — 0.724
- GoldenCoast-BAF-A1-UM (PSP10105) — 0.723
- GoldenCoast-BAF-B2-UM (PSP10108) — 0.723
- Maui-2-PS (PSP10041) — 0.721
- Orissa-India-ITW (PSP10071) — 0.721
- GoldenCoast-BAF-A2-UM (PSP10106) — 0.721
- Huautla-3-PS (PSP10005) — 0.721
- Huautla-2-redo-SW (PSP10030) — 0.720
- GoldenTeacher-3-SW (PSP10029) — 0.720
- Huautla-3-redo-SW (PSP10031) — 0.720
- Ecuador-3-SW (PSP10025) — 0.720
- Bplus-2-redo-SW (PSP10015) — 0.720
- Maui-1-PS (PSP10040) — 0.719
- Maui-3-PS (PSP10042) — 0.719
- Bplus-1-redo-SW (PSP10014) — 0.718
- Bplus-3-redo-SW (PSP10016) — 0.717
- Puerto-Rican-ITW (PSP10078) — 0.716
- Gulf-Coast (PSP10091) — 0.716
- Gulf-Coast-BAF (PSP10090) — 0.716
Sequence Data Downloads
The blockchain-registered VCF above can be downloaded by anyone, so its hash can be checked independently against the blockchain record. The remaining sequence data files — FASTQ, BAM and assemblies — are available to authorised accounts. Log in to download, or contact us for access.
Psilocybin
The psilocybin biosynthesis genes sit together in one cluster on chromosome 10 (psiD, psiK, psiM, psiH, psiR, psiT1, psiT2). Every assembled genome in Psilocydia was compared with the MGC_Penvy_1 reference across this window; below are the variants Penvy-2-SW carries there, and which other samples carry the same ones. This section compares assemblies only; the psilocybin gene cards under Variants combine the assembly with the reads, so they can list changes that are not here.
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The enzymes in 3D
This sample's version of each enzyme next to the P. Envy reference's. Flip between the two models; the track underneath shows every change seen in the collection and how many samples carry it, with this sample's changes filled in.
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Blockchain Registration Information
- Transaction ID
-
2daeb863d73d03cf
cf546f9c1ea65ea0 0f11061d701f1c60 9ebc53369a65a8d0 - Stamping Certificate
- Download PDF (39.5 KB)
- SHASUM Hash
-
9188c7f0e94a3fa1c0eeb784c5313268 035c5d408e4b95c8 c51d39ab4892dea3