Advanced Strain Search

Costa-Rica-3-redo-SW

PSP 10024

DNA Source: SporeWorks

General Information

Accession Date
May 11, 2021
Report Type
Whole-Genome Sequencing
DNA Source Website
sporeworks.com

Genetic Information

These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.

Psilocybin Synthase Gene Coverage

Learn more about read coverage plots.

Read Coverage
No. of Contigs (>= 25K bp)
0
No. of Contigs (>= 50K bp)
0
Total Length (>= 25K bp)
0
Total Length (>= 50K bp)
0
Total Contigs
30,057
Largest Contig
13,933
Total Length
27,215,546
GC (%)
45.83
N50
938

Learn more about blob plots.

Blob Plot
High-resolution blob plot

Variants

PsiT1 21 variants — 2 HIGH   19 MODERATE
PsiT1
MODERATE p.Glu121Gly c.362A>G missense variant & splice region variant A/G
CM039007.1:1663786
PsiT1
MODERATE p.Ile214Leu c.640A>C missense variant A/C
CM039007.1:1664184
PsiT1
HIGH p.Ser223* c.668C>G stop gained C/G
CM039007.1:1664264
PsiT1
MODERATE p.Thr246Ile c.737C>T missense variant C/T
CM039007.1:1664333
PsiT1
MODERATE p.Arg266Ser c.798A>T missense variant A/T
CM039007.1:1664394
PsiT1
MODERATE p.Thr386Ala c.1156A>G missense variant A/G
CM039007.1:1664803
PsiT1
MODERATE p.Phe459Leu c.1377T>A missense variant T/A
CM039007.1:1665085
PsiT1
MODERATE p.Ile505Val c.1513A>G missense variant A/G
CM039007.1:1665277
PsiT1
MODERATE p.His539Arg c.1616A>G missense variant A/G
CM039007.1:1665560
PsiT1
MODERATE p.Met542Ile c.1626G>A missense variant G/A
CM039007.1:1665570
PsiT1
MODERATE p.Ile563Leu c.1687A>C missense variant A/C
CM039007.1:1665631
PsiT1
MODERATE p.Val564Ile c.1690G>A missense variant G/A
CM039007.1:1665634
PsiT1
MODERATE p.Asn572Asp c.1714A>G missense variant A/G
CM039007.1:1665658
PsiT1
HIGH c.1720+1G>T c.1720+1G>T splice donor variant & intron variant G/T
CM039007.1:1665665
PsiT1
MODERATE p.Val579Ile c.1735G>A missense variant G/A
CM039007.1:1666040
PsiT1
MODERATE p.Val579Ala c.1736T>C missense variant T/C
CM039007.1:1666041
PsiT1
MODERATE p.Ser680Ala c.2038T>G missense variant T/G
CM039007.1:1666406
PsiT1
MODERATE p.Leu689Val c.2065T>G missense variant T/G
CM039007.1:1666433
PsiT1
MODERATE p.Glu746Gly c.2237A>G missense variant A/G
CM039007.1:1666605
PsiT1
MODERATE p.Arg752Gly c.2254A>G missense variant A/G
CM039007.1:1666622
PsiT1
MODERATE p.Gln858Leu c.2573A>T missense variant A/T
CM039007.1:1666941
PsiH 1 variant — 1 MODERATE
PsiH
MODERATE p.Lys236Asn c.708G>T missense variant G/T
CM039007.1:1668429
PsiM 2 variants — 1 HIGH   1 MODERATE
PsiM
MODERATE p.Arg102Lys c.305G>A missense variant C/T
CM039007.1:1674573
PsiM
HIGH c.225-2A>T c.225-2A>T splice acceptor variant & intron variant T/A
CM039007.1:1674655
PsiD 1 variant — 1 MODERATE
PsiD
MODERATE p.Leu22Phe c.66G>T missense variant C/A
CM039007.1:1677485
Fvcpc2 1 variant — 1 MODERATE
Fvcpc2
MODERATE p.Ser201Pro c.601T>C missense variant T/C
CM038999.1:1973492

Genetic Relatives

Nearest

  1. Costa-Rica-2-redo-SW (PSP10023) — 0.128
  2. Costa-Rica-1-redo-SW (PSP10022) — 0.134
  3. Costa-Rica-1-redo-SW (PSP10003) — 0.202
  4. Costa-Rica-2-redo-SW (PSP10004) — 0.210
  5. Penvy-2-SW (PSP10075) — 0.296
  6. Penvy-Col5-PS (PSP10044) — 0.296
  7. Penvy-1-PS (PSP10045) — 0.296
  8. Penvy-Col4-PS (PSP10043) — 0.296
  9. Roatan-Honduras-4-Mush (PSP10079) — 0.310
  10. Arenal-Volcano-1-Mush (PSP10059) — 0.314
  11. Luminous-lucies-2-PS (PSP10032) — 0.316
  12. Luminous-lucies-3-PS (PSP10033) — 0.316
  13. Luminous-lucies-1-PS (PSP10034) — 0.316
  14. Treasure-coast-1-PS (PSP10054) — 0.317
  15. Treasure-coast-3-PS (PSP10056) — 0.317
  16. Treasure-Coast-2-Mush (PSP10082) — 0.317
  17. Treasure-coast-2-PS (PSP10055) — 0.317
  18. ColumbiaRust-1-SW (PSP10021) — 0.321
  19. Bplus-ITW-WM (PSP10129) — 0.328
  20. Orissa-India-4-Mush (PSP10073) — 0.331

Most Distant

  1. Bplus-3-PS (PSP10001) — 0.639
  2. GoldenCoast-BAF-A1-UM (PSP10105) — 0.637
  3. GoldenCoast-BAF-B1-UM (PSP10107) — 0.636
  4. GoldenCoast-BAF-B2-UM (PSP10108) — 0.635
  5. GoldenCoast-BAF-A2-UM (PSP10106) — 0.635
  6. Puerto-Rican-ITW (PSP10078) — 0.635
  7. Orissa-India-ITW (PSP10071) — 0.634
  8. Bplus-2-redo-SW (PSP10015) — 0.633
  9. Huautla-3-PS (PSP10005) — 0.632
  10. Bplus-1-redo-SW (PSP10014) — 0.632
  11. Bplus-3-redo-SW (PSP10016) — 0.632
  12. Maui-2-PS (PSP10041) — 0.631
  13. Huautla-3-redo-SW (PSP10031) — 0.631
  14. Huautla-2-redo-SW (PSP10030) — 0.631
  15. Ecuador-3-SW (PSP10025) — 0.631
  16. GoldenTeacher-3-SW (PSP10029) — 0.631
  17. McKennaii-1-PS (PSP10069) — 0.630
  18. Maui-3-PS (PSP10042) — 0.630
  19. True-Albino-Teacher-ITW-WM (PSP10140) — 0.630
  20. Maui-1-PS (PSP10040) — 0.630

Sequence Data Downloads

The blockchain-registered VCF above can be downloaded by anyone, so its hash can be checked independently against the blockchain record. The remaining sequence data files — FASTQ, BAM and assemblies — are available to authorised accounts. Log in to download, or contact us for access.

Blockchain Registration Information

Transaction ID
8c50e820eef1c5e91e17155e896dc6f9265bce833f924b443d238e95fad3096f
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
b6d4497f3c8e7e714c77dd267d999a13dfb7999a15e42678dc5966a05392361c

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