Orissa-India-4-Mush
PSP 10073
DNA Source: Mushrooms.com
General Information
- Accession Date
- June 13, 2021
- Report Type
- Whole-Genome Sequencing
- DNA Source Website
- mushrooms.com
Genetic Information
File Downloads
These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.
- No. of Contigs (>= 25K bp)
- 435
- No. of Contigs (>= 50K bp)
- 181
- Total Length (>= 25K bp)
- 26,177,519
- Total Length (>= 50K bp)
- 17,202,574
- Total Contigs
- 10,901
- Largest Contig
- 458,697
- Total Length
- 47,566,643
- GC (%)
- 46.44
- N50
- 30,635
Variants
| PsiT1 | c.362A>G | p.Glu121Gly | missense variant & splice region variant | moderate | CM039007.1 | 1663786 | A/G |
| PsiT1 | c.365-1G>A | splice acceptor variant & intron variant | high | CM039007.1 | 1663847 | G/A | |
| PsiT1 | c.640A>C | p.Ile214Leu | missense variant | moderate | CM039007.1 | 1664184 | A/C |
| PsiT1 | c.737C>T | p.Thr246Ile | missense variant | moderate | CM039007.1 | 1664333 | C/T |
| PsiT1 | c.798A>T | p.Arg266Ser | missense variant | moderate | CM039007.1 | 1664394 | A/T |
| PsiT1 | c.1156A>G | p.Thr386Ala | missense variant | moderate | CM039007.1 | 1664803 | A/G |
| PsiT1 | c.1513A>G | p.Ile505Val | missense variant | moderate | CM039007.1 | 1665277 | A/G |
| PsiT1 | c.1616A>G | p.His539Arg | missense variant | moderate | CM039007.1 | 1665560 | A/G |
| PsiT1 | c.1626G>A | p.Met542Ile | missense variant | moderate | CM039007.1 | 1665570 | G/A |
| PsiT1 | c.1687A>C | p.Ile563Leu | missense variant | moderate | CM039007.1 | 1665631 | A/C |
| PsiT1 | c.1690G>A | p.Val564Ile | missense variant | moderate | CM039007.1 | 1665634 | G/A |
| PsiT1 | c.1714A>G | p.Asn572Asp | missense variant | moderate | CM039007.1 | 1665658 | A/G |
| PsiT1 | c.1720+1G>T | splice donor variant & intron variant | high | CM039007.1 | 1665665 | G/T | |
| PsiT1 | c.1735G>A | p.Val579Ile | missense variant | moderate | CM039007.1 | 1666040 | G/A |
| PsiT1 | c.1736T>C | p.Val579Ala | missense variant | moderate | CM039007.1 | 1666041 | T/C |
| PsiT1 | c.1864A>G | p.Lys622Glu | missense variant | moderate | CM039007.1 | 1666169 | A/G |
| PsiT1 | c.2038T>G | p.Ser680Ala | missense variant | moderate | CM039007.1 | 1666406 | T/G |
| PsiT1 | c.2065T>G | p.Leu689Val | missense variant | moderate | CM039007.1 | 1666433 | T/G |
| PsiT1 | c.2237A>G | p.Glu746Gly | missense variant | moderate | CM039007.1 | 1666605 | A/G |
| PsiT1 | c.2254A>G | p.Arg752Gly | missense variant | moderate | CM039007.1 | 1666622 | A/G |
| PsiT1 | c.2573A>T | p.Gln858Leu | missense variant | moderate | CM039007.1 | 1666941 | A/T |
Nearest genetic relatives (All Samples)
0
0.092
0.183
0.275
0.367
- 0.094 Orissa-India-1-Mush (PSP10072)
- 0.192 Penvy-2-SW (PSP10075)
- 0.192 Penvy-1-PS (PSP10045)
- 0.192 Penvy-Col5-PS (PSP10044)
- 0.192 Penvy-Col4-PS (PSP10043)
- 0.300 Roatan-Honduras-4-Mush (PSP10079)
- 0.301 MGC 2016 unknown strain (PSP10012)
- 0.316 Z-strain-1-Mush (PSP10083)
- 0.331 Costa-Rica-3-redo-SW (PSP10024)
- 0.331 Costa-Rica-1-redo-SW (PSP10022)
- 0.333 Costa-Rica-2-redo-SW (PSP10023)
- 0.337 Arenal-Volcano-1-Mush (PSP10059)
- 0.338 Bplus-ITW-WM (PSP10129)
- 0.340 Luminous-lucies-2-PS (PSP10032)
- 0.340 Luminous-lucies-1-PS (PSP10034)
- 0.340 Luminous-lucies-3-PS (PSP10033)
- 0.340 Treasure-Coast-2-Mush (PSP10082)
- 0.342 Treasure-coast-3-PS (PSP10056)
- 0.343 Treasure-coast-1-PS (PSP10054)
- 0.343 Treasure-coast-2-PS (PSP10055)
Most genetically distant strains (All Samples)
0
0.158
0.317
0.475
0.633
- 0.617 Bplus-3-PS (PSP10001)
- 0.613 GoldenCoast-BAF-B1-UM (PSP10107)
- 0.613 GoldenCoast-BAF-B2-UM (PSP10108)
- 0.613 GoldenCoast-BAF-A1-UM (PSP10105)
- 0.611 GoldenCoast-BAF-A2-UM (PSP10106)
- 0.610 Puerto-Rican-ITW (PSP10078)
- 0.610 Orissa-India-ITW (PSP10071)
- 0.610 Huautla-2-redo-SW (PSP10030)
- 0.609 Huautla-3-redo-SW (PSP10031)
- 0.609 Huautla-3-PS (PSP10005)
- 0.608 Gulf-Coast-BAF (PSP10090)
- 0.608 Gulf-Coast (PSP10091)
- 0.608 True-Albino-Teacher-ITW-WM (PSP10140)
- 0.607 Bplus-2-redo-SW (PSP10015)
- 0.606 Bplus-1-redo-SW (PSP10014)
- 0.606 Bplus-3-redo-SW (PSP10016)
- 0.606 Ecuador-3-SW (PSP10025)
- 0.606 Maui-2-PS (PSP10041)
- 0.606 GoldenTeacher-3-SW (PSP10029)
- 0.605 Avery-Albino-ITW-WM (PSP10123)
Blockchain Registration Information
- Transaction ID
-
93f67d9c357b99fb
a5cad00ae91ae4bc 50522bca5cd4300d 162ca0e52cba432a - Stamping Certificate
- Download PDF (39.4 KB)
- SHASUM Hash
-
c044ed2ffa2d9efb8a049f67e17b6c8d c5e3b283bedd5f20 f85bb407b50239b4
