Orissa-India-4-Mush
PSP 10073
DNA Source: Mushrooms.com
General Information
- Accession Date
- June 13, 2021
- Report Type
- Whole-Genome Sequencing
- DNA Source Website
- mushrooms.com
Genetic Information
These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.
- No. of Contigs (>= 25K bp)
- 435
- No. of Contigs (>= 50K bp)
- 181
- Total Length (>= 25K bp)
- 26,177,519
- Total Length (>= 50K bp)
- 17,202,574
- Total Contigs
- 10,901
- Largest Contig
- 458,697
- Total Length
- 47,566,643
- GC (%)
- 46.44
- N50
- 30,635
Variants
PsiT1
21 variants
—
2 HIGH 19 MODERATE
PsiT1
MODERATE
p.Glu121Gly
c.362A>G
missense variant & splice region variant
A/G
CM039007.1:1663786
PsiT1
HIGH
c.365-1G>A
c.365-1G>A
splice acceptor variant & intron variant
G/A
CM039007.1:1663847
PsiT1
MODERATE
p.Ile214Leu
c.640A>C
missense variant
A/C
CM039007.1:1664184
PsiT1
MODERATE
p.Thr246Ile
c.737C>T
missense variant
C/T
CM039007.1:1664333
PsiT1
MODERATE
p.Arg266Ser
c.798A>T
missense variant
A/T
CM039007.1:1664394
PsiT1
MODERATE
p.Thr386Ala
c.1156A>G
missense variant
A/G
CM039007.1:1664803
PsiT1
MODERATE
p.Ile505Val
c.1513A>G
missense variant
A/G
CM039007.1:1665277
PsiT1
MODERATE
p.His539Arg
c.1616A>G
missense variant
A/G
CM039007.1:1665560
PsiT1
MODERATE
p.Met542Ile
c.1626G>A
missense variant
G/A
CM039007.1:1665570
PsiT1
MODERATE
p.Ile563Leu
c.1687A>C
missense variant
A/C
CM039007.1:1665631
PsiT1
MODERATE
p.Val564Ile
c.1690G>A
missense variant
G/A
CM039007.1:1665634
PsiT1
MODERATE
p.Asn572Asp
c.1714A>G
missense variant
A/G
CM039007.1:1665658
PsiT1
HIGH
c.1720+1G>T
c.1720+1G>T
splice donor variant & intron variant
G/T
CM039007.1:1665665
PsiT1
MODERATE
p.Val579Ile
c.1735G>A
missense variant
G/A
CM039007.1:1666040
PsiT1
MODERATE
p.Val579Ala
c.1736T>C
missense variant
T/C
CM039007.1:1666041
PsiT1
MODERATE
p.Lys622Glu
c.1864A>G
missense variant
A/G
CM039007.1:1666169
PsiT1
MODERATE
p.Ser680Ala
c.2038T>G
missense variant
T/G
CM039007.1:1666406
PsiT1
MODERATE
p.Leu689Val
c.2065T>G
missense variant
T/G
CM039007.1:1666433
PsiT1
MODERATE
p.Glu746Gly
c.2237A>G
missense variant
A/G
CM039007.1:1666605
PsiT1
MODERATE
p.Arg752Gly
c.2254A>G
missense variant
A/G
CM039007.1:1666622
PsiT1
MODERATE
p.Gln858Leu
c.2573A>T
missense variant
A/T
CM039007.1:1666941
Genetic Relatives
Nearest
- Orissa-India-1-Mush (PSP10072) — 0.094
- Penvy-2-SW (PSP10075) — 0.192
- Penvy-1-PS (PSP10045) — 0.192
- Penvy-Col5-PS (PSP10044) — 0.192
- Penvy-Col4-PS (PSP10043) — 0.192
- Roatan-Honduras-4-Mush (PSP10079) — 0.300
- MGC_2016_unknown_strain (PSP10012) — 0.301
- Z-strain-1-Mush (PSP10083) — 0.316
- Costa-Rica-3-redo-SW (PSP10024) — 0.331
- Costa-Rica-1-redo-SW (PSP10022) — 0.331
- Costa-Rica-2-redo-SW (PSP10023) — 0.333
- Arenal-Volcano-1-Mush (PSP10059) — 0.337
- Bplus-ITW-WM (PSP10129) — 0.338
- Luminous-lucies-2-PS (PSP10032) — 0.340
- Luminous-lucies-1-PS (PSP10034) — 0.340
- Luminous-lucies-3-PS (PSP10033) — 0.340
- Treasure-Coast-2-Mush (PSP10082) — 0.340
- Treasure-coast-3-PS (PSP10056) — 0.342
- Treasure-coast-1-PS (PSP10054) — 0.343
- Treasure-coast-2-PS (PSP10055) — 0.343
Most Distant
- Bplus-3-PS (PSP10001) — 0.617
- GoldenCoast-BAF-B1-UM (PSP10107) — 0.613
- GoldenCoast-BAF-B2-UM (PSP10108) — 0.613
- GoldenCoast-BAF-A1-UM (PSP10105) — 0.613
- GoldenCoast-BAF-A2-UM (PSP10106) — 0.611
- Puerto-Rican-ITW (PSP10078) — 0.610
- Orissa-India-ITW (PSP10071) — 0.610
- Huautla-2-redo-SW (PSP10030) — 0.610
- Huautla-3-redo-SW (PSP10031) — 0.609
- Huautla-3-PS (PSP10005) — 0.609
- Gulf-Coast-BAF (PSP10090) — 0.608
- Gulf-Coast (PSP10091) — 0.608
- True-Albino-Teacher-ITW-WM (PSP10140) — 0.608
- Bplus-2-redo-SW (PSP10015) — 0.607
- Bplus-1-redo-SW (PSP10014) — 0.606
- Bplus-3-redo-SW (PSP10016) — 0.606
- Ecuador-3-SW (PSP10025) — 0.606
- Maui-2-PS (PSP10041) — 0.606
- GoldenTeacher-3-SW (PSP10029) — 0.606
- Avery-Albino-ITW-WM (PSP10123) — 0.605
Sequence Data Downloads
The blockchain-registered VCF above can be downloaded by anyone, so its hash can be checked independently against the blockchain record. The remaining sequence data files — FASTQ, BAM and assemblies — are available to authorised accounts. Log in to download, or contact us for access.
Blockchain Registration Information
- Transaction ID
-
93f67d9c357b99fb
a5cad00ae91ae4bc 50522bca5cd4300d 162ca0e52cba432a - Stamping Certificate
- Download PDF (39.4 KB)
- SHASUM Hash
-
c044ed2ffa2d9efb8a049f67e17b6c8d c5e3b283bedd5f20 f85bb407b50239b4