Chitwan-1-SW
PSP 10002
DNA Source: SporeWorks
General Information
- Accession Date
- May 31, 2021
- Report Type
- Whole-Genome Sequencing
- DNA Source Website
- sporeworks.com
Genetic Information
These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.
- No. of Contigs (>= 25K bp)
- 374
- No. of Contigs (>= 50K bp)
- 149
- Total Length (>= 25K bp)
- 23,549,790
- Total Length (>= 50K bp)
- 15,773,293
- Total Contigs
- 12,608
- Largest Contig
- 529,686
- Total Length
- 48,284,473
- GC (%)
- 45.64
- N50
- 23,758
Variants
PsiR
1 variant
—
1 MODERATE
PsiR
MODERATE
p.Ala344Val
c.1031C>T
missense variant
G/A
CM039007.1:1655743
PsiT1
21 variants
—
1 HIGH 20 MODERATE
PsiT1
MODERATE
p.Glu121Gly
c.362A>G
missense variant & splice region variant
A/G
CM039007.1:1663786
PsiT1
MODERATE
p.Ile214Leu
c.640A>C
missense variant
A/C
CM039007.1:1664184
PsiT1
MODERATE
p.Thr246Ile
c.737C>T
missense variant
C/T
CM039007.1:1664333
PsiT1
MODERATE
p.Arg266Ser
c.798A>T
missense variant
A/T
CM039007.1:1664394
PsiT1
MODERATE
p.Leu268Ile
c.802C>A
missense variant
C/A
CM039007.1:1664398
PsiT1
MODERATE
p.Thr386Ala
c.1156A>G
missense variant
A/G
CM039007.1:1664803
PsiT1
MODERATE
p.Ile505Val
c.1513A>G
missense variant
A/G
CM039007.1:1665277
PsiT1
MODERATE
p.His539Arg
c.1616A>G
missense variant
A/G
CM039007.1:1665560
PsiT1
MODERATE
p.Met542Ile
c.1626G>A
missense variant
G/A
CM039007.1:1665570
PsiT1
MODERATE
p.Ile563Leu
c.1687A>C
missense variant
A/C
CM039007.1:1665631
PsiT1
MODERATE
p.Val564Ile
c.1690G>A
missense variant
G/A
CM039007.1:1665634
PsiT1
MODERATE
p.Asn572Asp
c.1714A>G
missense variant
A/G
CM039007.1:1665658
PsiT1
HIGH
c.1720+1G>T
c.1720+1G>T
splice donor variant & intron variant
G/T
CM039007.1:1665665
PsiT1
MODERATE
p.Val579Ile
c.1735G>A
missense variant
G/A
CM039007.1:1666040
PsiT1
MODERATE
p.Val579Ala
c.1736T>C
missense variant
T/C
CM039007.1:1666041
PsiT1
MODERATE
p.Arg669Trp
c.2005C>T
missense variant
C/T
CM039007.1:1666373
PsiT1
MODERATE
p.Ser680Ala
c.2038T>G
missense variant
T/G
CM039007.1:1666406
PsiT1
MODERATE
p.Leu689Val
c.2065T>G
missense variant
T/G
CM039007.1:1666433
PsiT1
MODERATE
p.Glu746Gly
c.2237A>G
missense variant
A/G
CM039007.1:1666605
PsiT1
MODERATE
p.Arg752Gly
c.2254A>G
missense variant
A/G
CM039007.1:1666622
PsiT1
MODERATE
p.Gln858Leu
c.2573A>T
missense variant
A/T
CM039007.1:1666941
PsiM
1 variant
—
1 MODERATE
PsiM
MODERATE
p.Arg102Lys
c.305G>A
missense variant
C/T
CM039007.1:1674573
PsiD
1 variant
—
1 MODERATE
PsiD
MODERATE
p.Leu22Phe
c.66G>T
missense variant
C/A
CM039007.1:1677485
Genetic Relatives
Nearest
- Z-strain-1-Mush (PSP10083) — 0.323
- Arenal-Volcano-1-Mush (PSP10059) — 0.330
- Luminous-lucies-2-PS (PSP10032) — 0.331
- Luminous-lucies-3-PS (PSP10033) — 0.331
- Luminous-lucies-1-PS (PSP10034) — 0.331
- Roatan-Honduras-4-Mush (PSP10079) — 0.334
- Treasure-Coast-2-Mush (PSP10082) — 0.338
- ColumbiaRust-1-SW (PSP10021) — 0.338
- Costa-Rica-3-redo-SW (PSP10024) — 0.338
- Treasure-coast-3-PS (PSP10056) — 0.339
- Treasure-coast-2-PS (PSP10055) — 0.339
- Treasure-coast-1-PS (PSP10054) — 0.339
- Tosohatchee-print-ITW (PSP10081) — 0.340
- MGC_2016_unknown_strain (PSP10012) — 0.340
- Penvy-2-SW (PSP10075) — 0.349
- Penvy-Col5-PS (PSP10044) — 0.350
- Penvy-1-PS (PSP10045) — 0.350
- Penvy-Col4-PS (PSP10043) — 0.350
- Orissa-India-4-Mush (PSP10073) — 0.350
- Guapile-ITW-col-WM (PSP10132) — 0.351
Most Distant
- Bplus-3-PS (PSP10001) — 0.585
- GoldenCoast-BAF-A1-UM (PSP10105) — 0.583
- True-Albino-Teacher-ITW-WM (PSP10140) — 0.583
- GoldenCoast-BAF-A2-UM (PSP10106) — 0.582
- Avery-Albino-ITW-WM (PSP10123) — 0.582
- GoldenCoast-BAF-B1-UM (PSP10107) — 0.581
- Orissa-India-ITW (PSP10071) — 0.580
- GoldenCoast-BAF-B2-UM (PSP10108) — 0.580
- Bplus (PSP10088) — 0.579
- HUA-Early (PSP10092) — 0.579
- Gulf-Coast-BAF (PSP10090) — 0.578
- Burma-1-SW (PSP10020) — 0.578
- Gulf-Coast (PSP10091) — 0.578
- McKennaii-1-PS (PSP10069) — 0.577
- Ecuador-3-SW (PSP10025) — 0.577
- GoldenCoast-UM (PSP10109) — 0.576
- Bplus-3-redo-SW (PSP10016) — 0.576
- Bplus-1-redo-SW (PSP10014) — 0.576
- Bplus-2-redo-SW (PSP10015) — 0.576
- GoldenTeacher-3-SW (PSP10029) — 0.576
Sequence Data Downloads
The blockchain-registered VCF above can be downloaded by anyone, so its hash can be checked independently against the blockchain record. The remaining sequence data files — FASTQ, BAM and assemblies — are available to authorised accounts. Log in to download, or contact us for access.
Blockchain Registration Information
- Transaction ID
-
fcdef402fb3fd807
5fa60871a74398df d53edb3abd925728 0abdb9cd346c25a3 - Stamping Certificate
- Download PDF (39.6 KB)
- SHASUM Hash
-
443e8ba6c0ed518276dace50a2ce65d5 78bbf384148d9afc 1ee7c7f96813fcc1