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Costa-Rica-1-redo-SW

PSP 10022

DNA Source: SporeWorks

General Information

Accession Date
May 11, 2021
Report Type
Whole-Genome Sequencing
DNA Source Website
sporeworks.com

Genetic Information

These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.

Psilocybin Synthase Gene Coverage

Learn more about read coverage plots.

Read Coverage
No. of Contigs (>= 25K bp)
0
No. of Contigs (>= 50K bp)
0
Total Length (>= 25K bp)
0
Total Length (>= 50K bp)
0
Total Contigs
410
Largest Contig
9,161
Total Length
375,614
GC (%)
38.62
N50
907

Learn more about blob plots.

Blob Plot
High-resolution blob plot

Variants

PsiT1 10 variants — 1 HIGH   9 MODERATE
PsiT1
MODERATE p.His539Arg c.1616A>G missense variant A/G
CM039007.1:1665560
PsiT1
MODERATE p.Met542Ile c.1626G>A missense variant G/A
CM039007.1:1665570
PsiT1
MODERATE p.Asn572Asp c.1714A>G missense variant A/G
CM039007.1:1665658
PsiT1
HIGH c.1720+1G>T c.1720+1G>T splice donor variant & intron variant G/T
CM039007.1:1665665
PsiT1
MODERATE p.Val579Ile c.1735G>A missense variant G/A
CM039007.1:1666040
PsiT1
MODERATE p.Val579Ala c.1736T>C missense variant T/C
CM039007.1:1666041
PsiT1
MODERATE p.Leu689Val c.2065T>G missense variant T/G
CM039007.1:1666433
PsiT1
MODERATE p.Glu746Gly c.2237A>G missense variant A/G
CM039007.1:1666605
PsiT1
MODERATE p.Arg752Gly c.2254A>G missense variant A/G
CM039007.1:1666622
PsiT1
MODERATE p.Gln858Leu c.2573A>T missense variant A/T
CM039007.1:1666941
PsiM 1 variant — 1 MODERATE
PsiM
MODERATE p.Arg102Lys c.305G>A missense variant C/T
CM039007.1:1674573

Genetic Relatives

Nearest

  1. Costa-Rica-3-redo-SW (PSP10024) — 0.134
  2. Costa-Rica-2-redo-SW (PSP10023) — 0.140
  3. Costa-Rica-1-redo-SW (PSP10003) — 0.226
  4. Costa-Rica-2-redo-SW (PSP10004) — 0.239
  5. Penvy-Col5-PS (PSP10044) — 0.270
  6. Penvy-1-PS (PSP10045) — 0.270
  7. Penvy-2-SW (PSP10075) — 0.271
  8. Penvy-Col4-PS (PSP10043) — 0.271
  9. Roatan-Honduras-4-Mush (PSP10079) — 0.323
  10. Treasure-coast-1-PS (PSP10054) — 0.328
  11. Treasure-coast-3-PS (PSP10056) — 0.328
  12. Treasure-coast-2-PS (PSP10055) — 0.328
  13. Treasure-Coast-2-Mush (PSP10082) — 0.328
  14. ColumbiaRust-1-SW (PSP10021) — 0.331
  15. Orissa-India-4-Mush (PSP10073) — 0.331
  16. Arenal-Volcano-1-Mush (PSP10059) — 0.332
  17. Bplus-ITW-WM (PSP10129) — 0.332
  18. Luminous-lucies-2-PS (PSP10032) — 0.336
  19. Luminous-lucies-3-PS (PSP10033) — 0.337
  20. Luminous-lucies-1-PS (PSP10034) — 0.337

Most Distant

  1. Bplus-3-PS (PSP10001) — 0.669
  2. GoldenCoast-BAF-B1-UM (PSP10107) — 0.668
  3. Maui-2-PS (PSP10041) — 0.668
  4. Huautla-3-PS (PSP10005) — 0.667
  5. GoldenCoast-BAF-B2-UM (PSP10108) — 0.667
  6. Huautla-3-redo-SW (PSP10031) — 0.667
  7. GoldenCoast-BAF-A1-UM (PSP10105) — 0.666
  8. Bplus-2-redo-SW (PSP10015) — 0.666
  9. Huautla-2-redo-SW (PSP10030) — 0.666
  10. Bplus-1-redo-SW (PSP10014) — 0.666
  11. Bplus-3-redo-SW (PSP10016) — 0.666
  12. Maui-3-PS (PSP10042) — 0.665
  13. GoldenTeacher-3-SW (PSP10029) — 0.665
  14. Puerto-Rican-ITW (PSP10078) — 0.665
  15. Maui-1-PS (PSP10040) — 0.665
  16. Ecuador-3-SW (PSP10025) — 0.665
  17. Orissa-India-ITW (PSP10071) — 0.665
  18. GoldenCoast-BAF-A2-UM (PSP10106) — 0.665
  19. Golden-Teacher (PSP10089) — 0.662
  20. GoldenTeacher-1-SW (PSP10027) — 0.662

Sequence Data Downloads

The blockchain-registered VCF above can be downloaded by anyone, so its hash can be checked independently against the blockchain record. The remaining sequence data files — FASTQ, BAM and assemblies — are available to authorised accounts. Log in to download, or contact us for access.

Blockchain Registration Information

Transaction ID
c23961a1d9c4c39467d4f2e7600528ca4283dd75c1014e6c3d775e94af734c04
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
c97d9754aeff2793a86a7421ac16f16d2a801071f524fb4c5500550949a6e1ab

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