Costa-Rica-1-redo-SW
PSP 10003
DNA Source: SporeWorks
General Information
- Accession Date
- May 31, 2021
- Report Type
- Whole-Genome Sequencing
- DNA Source Website
- sporeworks.com
Assessing…
Clone Test
Is Costa-Rica-1-redo-SW a resequencing of a culture already in Psilocydia? Every assembled genome was aligned directly to its closest genome in the collection and the divergence measured. Pairs that are one culture sequenced twice sit at or below about 0.03%; genuinely different cultures sit well above it. Where Costa-Rica-1-redo-SW falls on that scale answers the question, calibrated against the collection's own resequencings rather than a rule of thumb.
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Genetic Information
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What is in the assembly
Loading the contigs…
Variants
No variants to report
Genetic Relatives
Nearest
- Costa-Rica-3-redo-SW (PSP10024) — 0.202
- Costa-Rica-2-redo-SW (PSP10023) — 0.225
- Costa-Rica-1-redo-SW (PSP10022) — 0.226
- Costa-Rica-2-redo-SW (PSP10004) — 0.264
- Penvy-2-SW (PSP10075) — 0.334
- Penvy-Col5-PS (PSP10044) — 0.335
- Penvy-1-PS (PSP10045) — 0.335
- Penvy-Col4-PS (PSP10043) — 0.335
- Orissa-India-4-Mush (PSP10073) — 0.352
- Roatan-Honduras-4-Mush (PSP10079) — 0.353
- Chitwan-1-SW (PSP10002) — 0.355
- MGC_2016_unknown_strain (PSP10012) — 0.357
- Arenal-Volcano-1-Mush (PSP10059) — 0.358
- Luminous-lucies-3-PS (PSP10033) — 0.360
- Luminous-lucies-1-PS (PSP10034) — 0.360
- Luminous-lucies-2-PS (PSP10032) — 0.360
- ColumbiaRust-1-SW (PSP10021) — 0.366
- Orissa-India-1-Mush (PSP10072) — 0.370
- Treasure-Coast-2-Mush (PSP10082) — 0.371
- Treasure-coast-1-PS (PSP10054) — 0.371
Most Distant
- Bplus-3-PS (PSP10001) — 0.569
- GoldenCoast-BAF-B1-UM (PSP10107) — 0.567
- GoldenCoast-BAF-B2-UM (PSP10108) — 0.567
- GoldenCoast-BAF-A1-UM (PSP10105) — 0.566
- Puerto-Rican-ITW (PSP10078) — 0.565
- True-Albino-Teacher-ITW-WM (PSP10140) — 0.565
- Orissa-India-ITW (PSP10071) — 0.565
- GoldenCoast-BAF-A2-UM (PSP10106) — 0.565
- Bplus-2-redo-SW (PSP10015) — 0.564
- Bplus-1-redo-SW (PSP10014) — 0.563
- Huautla-3-PS (PSP10005) — 0.563
- Maui-2-PS (PSP10041) — 0.563
- Bplus-3-redo-SW (PSP10016) — 0.563
- Ecuador-3-SW (PSP10025) — 0.562
- Gulf-Coast (PSP10091) — 0.562
- Huautla-3-redo-SW (PSP10031) — 0.562
- Huautla-2-redo-SW (PSP10030) — 0.562
- Avery-Albino-ITW-WM (PSP10123) — 0.562
- GoldenTeacher-3-SW (PSP10029) — 0.562
- Maui-1-PS (PSP10040) — 0.562
Sequence Data Downloads
The blockchain-registered VCF above can be downloaded by anyone, so its hash can be checked independently against the blockchain record. The remaining sequence data files — FASTQ, BAM and assemblies — are available to authorised accounts. Log in to download, or contact us for access.
Psilocybin
The psilocybin biosynthesis genes sit together in one cluster on chromosome 10 (psiD, psiK, psiM, psiH, psiR, psiT1, psiT2). Every assembled genome in Psilocydia was compared with the MGC_Penvy_1 reference across this window; below are the variants Costa-Rica-1-redo-SW carries there, and which other samples carry the same ones. This section compares assemblies only; the psilocybin gene cards under Variants combine the assembly with the reads, so they can list changes that are not here.
Costa-Rica-1-redo-SW is not yet in the psilocybin cluster comparison: its assembly did not meet the completeness threshold used to build it, or it has not been assembled. The comparison is refreshed with each pipeline run.
See the psilocybin cluster across the whole collection →