Tosohatchee-print-ITW
PSP 10081
DNA Source: Inoculate the World
General Information
- Accession Date
- June 13, 2021
- Report Type
- Whole-Genome Sequencing
- DNA Source Website
- inoculatetheworld.com
Genetic Information
File Downloads
- No. of Contigs (>= 25K bp)
- 410
- No. of Contigs (>= 50K bp)
- 199
- Total Length (>= 25K bp)
- 29,140,872
- Total Length (>= 50K bp)
- 21,651,012
- Total Contigs
- 2,750
- Largest Contig
- 685,279
- Total Length
- 40,294,853
- GC (%)
- 46.13
- N50
- 55,779
Variants
PsiT1 | c.362A>G | p.Glu121Gly | missense variant & splice region variant | moderate | CM039007.1 | 1663786 | A/G |
PsiT1 | c.640A>C | p.Ile214Leu | missense variant | moderate | CM039007.1 | 1664184 | A/C |
PsiT1 | c.1735G>A | p.Val579Ile | missense variant | moderate | CM039007.1 | 1666040 | G/A |
PsiT1 | c.1736T>C | p.Val579Ala | missense variant | moderate | CM039007.1 | 1666041 | T/C |
PsiT1 | c.2254A>G | p.Arg752Gly | missense variant | moderate | CM039007.1 | 1666622 | A/G |
PsiM | c.305G>A | p.Arg102Lys | missense variant | moderate | CM039007.1 | 1674573 | C/T |
PsiM | c.129A>T | p.Glu43Asp | missense variant | moderate | CM039007.1 | 1674903 | T/A |
PsiD | c.66G>T | p.Leu22Phe | missense variant | moderate | CM039007.1 | 1677485 | C/A |
Nearest genetic relatives (All Samples)
- 0.310 Treasure-Coast-2-Mush (PSP10082)
- 0.311 Treasure-coast-3-PS (PSP10056)
- 0.311 Treasure-coast-1-PS (PSP10054)
- 0.311 Treasure-coast-2-PS (PSP10055)
- 0.322 Roatan-Honduras-4-Mush (PSP10079)
- 0.325 Penvy-2-SW (PSP10075)
- 0.326 Penvy-Col5-PS (PSP10044)
- 0.326 Penvy-1-PS (PSP10045)
- 0.326 Penvy-Col4-PS (PSP10043)
- 0.330 Arenal-Volcano-1-Mush (PSP10059)
- 0.333 Luminous-lucies-2-PS (PSP10032)
- 0.333 Luminous-lucies-3-PS (PSP10033)
- 0.333 Luminous-lucies-1-PS (PSP10034)
- 0.335 Bplus-ITW-WM (PSP10129)
- 0.340 Chitwan-1-SW (PSP10002)
- 0.344 Z-strain-1-Mush (PSP10083)
- 0.348 Costa-Rica-3-redo-SW (PSP10024)
- 0.352 Guapile-ITW-col-WM (PSP10132)
- 0.352 MGC 2016 unknown strain (PSP10012)
- 0.353 Costa-Rica-1-redo-SW (PSP10022)
Most genetically distant strains (All Samples)
- 0.598 Bplus-3-PS (PSP10001)
- 0.596 GoldenCoast-BAF-A1-UM (PSP10105)
- 0.596 Bplus-1-redo-SW (PSP10014)
- 0.596 Bplus-2-redo-SW (PSP10015)
- 0.596 Bplus-3-redo-SW (PSP10016)
- 0.595 GoldenCoast-BAF-A2-UM (PSP10106)
- 0.595 Ecuador-3-SW (PSP10025)
- 0.594 GoldenTeacher-3-SW (PSP10029)
- 0.594 GoldenCoast-BAF-B2-UM (PSP10108)
- 0.594 Maui-3-PS (PSP10042)
- 0.594 GoldenCoast-BAF-B1-UM (PSP10107)
- 0.594 Huautla-2-redo-SW (PSP10030)
- 0.594 GoldenTeacher-2-SW (PSP10028)
- 0.594 Maui-1-PS (PSP10040)
- 0.594 Maui-2-PS (PSP10041)
- 0.594 Huautla-3-redo-SW (PSP10031)
- 0.593 Puerto-Rican-ITW (PSP10078)
- 0.593 Huautla-3-PS (PSP10005)
- 0.591 GoldenTeacher-1-SW (PSP10027)
- 0.591 Golden-Teacher (PSP10089)
Blockchain Registration Information
- Transaction ID
-
f322049ff4df7375
fc1154525b7b7ad0 b133a7eb744c8f52 1e987dd4215b6130 - Stamping Certificate
- Download PDF (39.6 KB)
- SHASUM Hash
-
4f2f91edaf2da178
927c4a7d8873f98b 304a24e6f5c290db 3a9e9429400b5c83