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Costa-Rica-2-redo-SW

PSP 10004

DNA Source: SporeWorks

General Information

Accession Date
May 31, 2021
Report Type
Whole-Genome Sequencing
DNA Source Website
sporeworks.com

Genetic Information

These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.

Psilocybin Synthase Gene Coverage

Learn more about read coverage plots.

Read Coverage
No. of Contigs (>= 25K bp)
1
No. of Contigs (>= 50K bp)
0
Total Length (>= 25K bp)
26,667
Total Length (>= 50K bp)
0
Total Contigs
19,534
Largest Contig
26,667
Total Length
13,997,869
GC (%)
45.39
N50
694

Learn more about blob plots.

Blob Plot
High-resolution blob plot

Variants

PsiR 2 variants — 2 MODERATE
PsiR
MODERATE p.Val281Ile c.841G>A missense variant C/T
CM039007.1:1655933
PsiR
MODERATE p.Met191Thr c.572T>C missense variant A/G
CM039007.1:1656260
PsiT1 21 variants — 2 HIGH   19 MODERATE
PsiT1
MODERATE p.Gln35Arg c.104A>G missense variant A/G
CM039007.1:1663528
PsiT1
MODERATE p.Glu121Gly c.362A>G missense variant & splice region variant A/G
CM039007.1:1663786
PsiT1
HIGH c.365-1G>A c.365-1G>A splice acceptor variant & intron variant G/A
CM039007.1:1663847
PsiT1
MODERATE p.Ile214Leu c.640A>C missense variant A/C
CM039007.1:1664184
PsiT1
MODERATE p.Thr246Ile c.737C>T missense variant C/T
CM039007.1:1664333
PsiT1
MODERATE p.Arg266Ser c.798A>T missense variant A/T
CM039007.1:1664394
PsiT1
HIGH p.Ala337fs c.1007_1008insGATC frameshift variant CC/CCGATC
CM039007.1:1664602
PsiT1
MODERATE p.Thr386Ala c.1156A>G missense variant A/G
CM039007.1:1664803
PsiT1
MODERATE p.Ile505Val c.1513A>G missense variant A/G
CM039007.1:1665277
PsiT1
MODERATE p.His539Arg c.1616A>G missense variant A/G
CM039007.1:1665560
PsiT1
MODERATE p.Met542Ile c.1626G>A missense variant G/A
CM039007.1:1665570
PsiT1
MODERATE p.Phe549_Gly550del c.1644_1649delTTTTGG disruptive inframe deletion ATTGGTTTTGG/ATTGG
CM039007.1:1665583
PsiT1
MODERATE p.Ile563Leu c.1687A>C missense variant A/C
CM039007.1:1665631
PsiT1
MODERATE p.Val564Ile c.1690G>A missense variant G/A
CM039007.1:1665634
PsiT1
MODERATE p.Val579Ile c.1735G>A missense variant G/A
CM039007.1:1666040
PsiT1
MODERATE p.Val579Ala c.1736T>C missense variant T/C
CM039007.1:1666041
PsiT1
MODERATE p.Ser680Ala c.2038T>G missense variant T/G
CM039007.1:1666406
PsiT1
MODERATE p.Leu689Val c.2065T>G missense variant T/G
CM039007.1:1666433
PsiT1
MODERATE p.Glu746Gly c.2237A>G missense variant A/G
CM039007.1:1666605
PsiT1
MODERATE p.Arg752Gly c.2254A>G missense variant A/G
CM039007.1:1666622
PsiT1
MODERATE p.Leu839Ser c.2516T>C missense variant T/C
CM039007.1:1666884
PsiH 2 variants — 2 MODERATE
PsiH
MODERATE p.Gly30Trp c.88G>T missense variant G/T
CM039007.1:1667598
PsiH
MODERATE p.Lys236Asn c.708G>T missense variant G/T
CM039007.1:1668429
PsiM 3 variants — 3 MODERATE
PsiM
MODERATE p.Arg102Lys c.305G>A missense variant C/T
CM039007.1:1674573
PsiM
MODERATE p.Leu76Ser c.227T>C missense variant & splice region variant A/G
CM039007.1:1674651
PsiM
MODERATE p.Val37Ala c.110T>C missense variant A/G
CM039007.1:1674922
PsiD 2 variants — 2 MODERATE
PsiD
MODERATE p.Leu22Phe c.66G>T missense variant C/A
CM039007.1:1677485
PsiD
MODERATE p.Gln2Arg c.5A>G missense variant T/C
CM039007.1:1677603
Fvcpc2 2 variants — 2 MODERATE
Fvcpc2
MODERATE p.Ile58Ser c.173T>G missense variant T/G
CM038999.1:1972880
Fvcpc2
MODERATE p.His64Asp c.190C>G missense variant C/G
CM038999.1:1972897

Genetic Relatives

Nearest

  1. Costa-Rica-3-redo-SW (PSP10024) — 0.210
  2. Costa-Rica-2-redo-SW (PSP10023) — 0.233
  3. Costa-Rica-1-redo-SW (PSP10022) — 0.239
  4. Costa-Rica-1-redo-SW (PSP10003) — 0.264
  5. Penvy-2-SW (PSP10075) — 0.341
  6. Penvy-Col5-PS (PSP10044) — 0.342
  7. Penvy-1-PS (PSP10045) — 0.342
  8. Penvy-Col4-PS (PSP10043) — 0.342
  9. MGC_2016_unknown_strain (PSP10012) — 0.356
  10. Orissa-India-4-Mush (PSP10073) — 0.357
  11. Roatan-Honduras-4-Mush (PSP10079) — 0.360
  12. Chitwan-1-SW (PSP10002) — 0.360
  13. Arenal-Volcano-1-Mush (PSP10059) — 0.361
  14. Luminous-lucies-2-PS (PSP10032) — 0.363
  15. Luminous-lucies-1-PS (PSP10034) — 0.363
  16. Luminous-lucies-3-PS (PSP10033) — 0.363
  17. Treasure-coast-1-PS (PSP10054) — 0.375
  18. Orissa-India-1-Mush (PSP10072) — 0.375
  19. Treasure-Coast-2-Mush (PSP10082) — 0.375
  20. Treasure-coast-3-PS (PSP10056) — 0.375

Most Distant

  1. Bplus-3-PS (PSP10001) — 0.556
  2. GoldenCoast-BAF-B1-UM (PSP10107) — 0.555
  3. GoldenCoast-BAF-B2-UM (PSP10108) — 0.555
  4. Puerto-Rican-ITW (PSP10078) — 0.554
  5. GoldenCoast-BAF-A1-UM (PSP10105) — 0.553
  6. True-Albino-Teacher-ITW-WM (PSP10140) — 0.553
  7. Orissa-India-ITW (PSP10071) — 0.552
  8. GoldenCoast-BAF-A2-UM (PSP10106) — 0.551
  9. Bplus-2-redo-SW (PSP10015) — 0.551
  10. Huautla-3-PS (PSP10005) — 0.551
  11. Huautla-3-redo-SW (PSP10031) — 0.550
  12. Maui-2-PS (PSP10041) — 0.550
  13. Avery-Albino-ITW-WM (PSP10123) — 0.550
  14. Huautla-2-redo-SW (PSP10030) — 0.550
  15. Gulf-Coast (PSP10091) — 0.550
  16. Bplus-1-redo-SW (PSP10014) — 0.550
  17. Bplus-3-redo-SW (PSP10016) — 0.549
  18. Gulf-Coast-BAF (PSP10090) — 0.549
  19. GoldenTeacher-3-SW (PSP10029) — 0.549
  20. Maui-1-PS (PSP10040) — 0.548

Sequence Data Downloads

The blockchain-registered VCF above can be downloaded by anyone, so its hash can be checked independently against the blockchain record. The remaining sequence data files — FASTQ, BAM and assemblies — are available to authorised accounts. Log in to download, or contact us for access.

Blockchain Registration Information

Transaction ID
e1b9143040a81078c1677b3fd0d1761fb4e9ccdea1cf715271224ac8a9a0884e
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
015d8274989d8fb06342110d3ba052eefc5bd7f8d43e5014e6dd761ae4a24e6b

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