KOH-Samui-1-ITW
PSP 10063
DNA Source: Inoculate the World
General Information
- Accession Date
- June 13, 2021
- Report Type
- Whole-Genome Sequencing
- DNA Source Website
- inoculatetheworld.com
Genetic Information
File Downloads
- No. of Contigs (>= 25K bp)
- 405
- No. of Contigs (>= 50K bp)
- 213
- Total Length (>= 25K bp)
- 31,127,414
- Total Length (>= 50K bp)
- 24,197,901
- Total Contigs
- 3,484
- Largest Contig
- 688,661
- Total Length
- 40,727,704
- GC (%)
- 46.11
- N50
- 67,927
Variants
PsiT1 | c.362A>G | p.Glu121Gly | missense variant & splice region variant | moderate | CM039007.1 | 1663786 | A/G |
PsiT1 | c.640A>C | p.Ile214Leu | missense variant | moderate | CM039007.1 | 1664184 | A/C |
PsiT1 | c.1513A>G | p.Ile505Val | missense variant | moderate | CM039007.1 | 1665277 | A/G |
PsiT1 | c.1735G>A | p.Val579Ile | missense variant | moderate | CM039007.1 | 1666040 | G/A |
PsiT1 | c.1736T>C | p.Val579Ala | missense variant | moderate | CM039007.1 | 1666041 | T/C |
PsiT1 | c.2254A>G | p.Arg752Gly | missense variant | moderate | CM039007.1 | 1666622 | A/G |
PsiH | c.20C>T | p.Ser7Phe | missense variant | moderate | CM039007.1 | 1667530 | C/T |
PsiM | c.305G>A | p.Arg102Lys | missense variant | moderate | CM039007.1 | 1674573 | C/T |
PsiD | c.617G>A | p.Gly206Asp | missense variant | moderate | CM039007.1 | 1676885 | C/T |
PsiD | c.616G>A | p.Gly206Ser | missense variant | moderate | CM039007.1 | 1676886 | C/T |
PsiD | c.66G>T | p.Leu22Phe | missense variant | moderate | CM039007.1 | 1677485 | C/A |
Nearest genetic relatives (All Samples)
- 0.187 Samui-2-PS (PSP10048)
- 0.243 McKennaii-1-PS (PSP10069)
- 0.243 Orissa-India-ITW (PSP10071)
- 0.245 Bplus-3-PS (PSP10001)
- 0.246 GoldenCoast-BAF-A1-UM (PSP10105)
- 0.247 Bplus (PSP10088)
- 0.248 GoldenCoast-BAF-A2-UM (PSP10106)
- 0.249 Bplus-2-redo-SW (PSP10015)
- 0.249 HUA-Early (PSP10092)
- 0.250 Huautla-3-PS (PSP10005)
- 0.250 Bplus-1-redo-SW (PSP10014)
- 0.251 Bplus-3-redo-SW (PSP10016)
- 0.252 Maui-2-PS (PSP10041)
- 0.252 PES-2-SW (PSP10008)
- 0.252 Ecuador-3-PS (PSP10061)
- 0.252 Puerto-Rican-ITW (PSP10078)
- 0.253 Maui-3-PS (PSP10042)
- 0.253 Huautla-3-redo-SW (PSP10031)
- 0.254 Maui-1-PS (PSP10040)
- 0.254 Golden-Teacher (PSP10089)
Most genetically distant strains (All Samples)
- 0.568 Penvy-1-PS (PSP10045)
- 0.568 Penvy-Col4-PS (PSP10043)
- 0.568 Penvy-Col5-PS (PSP10044)
- 0.568 Penvy-2-SW (PSP10075)
- 0.554 Costa-Rica-1-redo-SW (PSP10022)
- 0.553 Costa-Rica-2-redo-SW (PSP10023)
- 0.544 Treasure-coast-1-PS (PSP10054)
- 0.544 Treasure-coast-3-PS (PSP10056)
- 0.544 Treasure-coast-2-PS (PSP10055)
- 0.542 Treasure-Coast-2-Mush (PSP10082)
- 0.529 Costa-Rica-3-redo-SW (PSP10024)
- 0.518 Bplus-ITW-WM (PSP10129)
- 0.518 Orissa-India-1-Mush (PSP10072)
- 0.517 ColumbiaRust-1-SW (PSP10021)
- 0.513 Arenal-Volcano-1-Mush (PSP10059)
- 0.511 Luminous-lucies-2-PS (PSP10032)
- 0.511 Luminous-lucies-3-PS (PSP10033)
- 0.511 Luminous-lucies-1-PS (PSP10034)
- 0.509 Roatan-Honduras-4-Mush (PSP10079)
- 0.507 Orissa-India-4-Mush (PSP10073)
Blockchain Registration Information
- Transaction ID
-
434b5ae97f283b87
a056879b8655daba 18f7fe55ce0fa8c9 9823abccb8f8b831 - Stamping Certificate
- Download PDF (39.9 KB)
- SHASUM Hash
-
94c94a9910315f42
5b3a256176f442dd 26204b5df4881a53 65ee473a1845e25d